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Yeast Tim44 C-terminal domain complexed with Cymal-3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 1.0M Ammonium Sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.01 59.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.595 α = 90 b = 100.595 β = 90 c = 209.79 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-BM-B 0.998 APS 23-BM-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 40 100 11326 11326 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.1 32.93 11326 10634 100 0.31174 0.2351 0.313 0.31655 0.2355 RANDOM 106.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.11 0.23 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.103 r_dihedral_angle_3_deg 19.134 r_dihedral_angle_4_deg 13.578 r_dihedral_angle_1_deg 4.838 r_mcangle_it 2.815 r_scangle_it 1.832 r_mcbond_it 1.565 r_angle_refined_deg 1.215 r_scbond_it 1.005 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.103 r_dihedral_angle_3_deg 19.134 r_dihedral_angle_4_deg 13.578 r_dihedral_angle_1_deg 4.838 r_mcangle_it 2.815 r_scangle_it 1.832 r_mcbond_it 1.565 r_angle_refined_deg 1.215 r_scbond_it 1.005 r_nbtor_refined 0.299 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.159 r_xyhbond_nbd_refined 0.137 r_symmetry_hbond_refined 0.12 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2836 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling PHASES phasing