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The Crystal Structure of Immunity Factor for SPN (IFS)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 1.6-2.0 ammonium sulfate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.77 55.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.032 α = 90 b = 108.032 β = 90 c = 147.047 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 Rosenbaum-Rock Si(111) sagitally focused monochromator 2005-06-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.97901, 0.97932, 0.99504 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 46.8 100 0.069 8.24 34514 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 46.78 66456 32775 1739 98.83 0.26042 0.26042 0.25875 0.28986 0.2813 RANDOM 35.886
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.01 0.03 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.238 r_dihedral_angle_4_deg 26.066 r_dihedral_angle_3_deg 18.2 r_dihedral_angle_1_deg 5.065 r_scangle_it 2.673 r_scbond_it 1.69 r_angle_refined_deg 1.101 r_mcangle_it 1.031 r_angle_other_deg 0.873 r_mcbond_it 0.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.238 r_dihedral_angle_4_deg 26.066 r_dihedral_angle_3_deg 18.2 r_dihedral_angle_1_deg 5.065 r_scangle_it 2.673 r_scbond_it 1.69 r_angle_refined_deg 1.101 r_mcangle_it 1.031 r_angle_other_deg 0.873 r_mcbond_it 0.525 r_mcbond_other 0.074 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4900 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 30
Software Software Software Name Purpose Blu-Ice data collection SHARP phasing REFMAC refinement d*TREK data reduction d*TREK data scaling