☰ Navigation Tabs
Crystal structure of FabG4 and coenzyme binary complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LLS PDB ENTRY 3LLS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.1M MES pH 6.5, 47% Polypropylene glycol , VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.15 42.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.069 α = 105.02 b = 71.027 β = 97.06 c = 92.917 γ = 93.66
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV++ mirrors 2010-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.589 88.799 95.4 0.151 7.7 3.9 45759 45759
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.73 90.7 0.842 0.842 0.979 0.498 0.9 3.7 6394
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3LLS 2.59 19.78 45758 2322 95.45 0.1713 0.1675 0.1946 0.2418 0.2558 RANDOM 42.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.38 -0.99 -2.47 0.72 0.16 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.977 r_dihedral_angle_4_deg 19.626 r_dihedral_angle_3_deg 18.271 r_dihedral_angle_1_deg 6.681 r_scangle_it 2.799 r_scbond_it 1.701 r_angle_refined_deg 1.621 r_mcangle_it 0.965 r_mcbond_it 0.52 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.977 r_dihedral_angle_4_deg 19.626 r_dihedral_angle_3_deg 18.271 r_dihedral_angle_1_deg 6.681 r_scangle_it 2.799 r_scbond_it 1.701 r_angle_refined_deg 1.621 r_mcangle_it 0.965 r_mcbond_it 0.52 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12057 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 189
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction StructureStudio data collection XSCALE data scaling