X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3H9Rpdb id: 3h9r chain A

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5293.1520% PEG 3350, 0.2M ammonium citrate dibasic pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.15K
Crystal Properties
Matthews coefficientSolvent content
2.2244.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.6α = 90
b = 98.7β = 117.42
c = 83.85γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC Q315 3x3 CCDKirkpatrick Baez bimorph mirror pair2010-01-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8241.8899.20.08611.64.310719810717224.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.821.9297.80.73424.215312

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb id: 3h9r chain A1.8237.222107172101787538599.110.165570.162770.21863RANDOM22.583
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.410.360.120.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.474
r_dihedral_angle_4_deg20.019
r_dihedral_angle_3_deg13.746
r_scangle_it10.197
r_scbond_it7.613
r_dihedral_angle_1_deg6.156
r_mcangle_it5.257
r_mcbond_it3.533
r_angle_refined_deg1.647
r_mcbond_other1.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.474
r_dihedral_angle_4_deg20.019
r_dihedral_angle_3_deg13.746
r_scangle_it10.197
r_scbond_it7.613
r_dihedral_angle_1_deg6.156
r_mcangle_it5.257
r_mcbond_it3.533
r_angle_refined_deg1.647
r_mcbond_other1.12
r_angle_other_deg0.867
r_chiral_restr0.111
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9541
Nucleic Acid Atoms
Solvent Atoms1019
Heterogen Atoms336

Software

Software
Software NamePurpose
GDAdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling