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Structure of the Rtt109-AcCoA/Vps75 complex and implications for chaperone-mediated histone acetylation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3Q33 pdb entry 3Q33
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 10.0% (v/v) PEG8000;
8% (v/v) ethylene glycol;
100 mM Hepes, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.02 59.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.085 α = 90 b = 119.001 β = 90 c = 80.292 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD mirrors 2008-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.988 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50 99.7 0.083 16.5 7.1 15348 15302 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.3 3.42 97.2 0.427 3.6 6.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT pdb entry 3Q33 3.3 48.01 1.34 15348 14631 735 99.37 0.2091 0.2071 0.2154 0.248 0.2578
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 34.3659 -16.2766 -18.0893
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 23.634 f_angle_d 1.309 f_chiral_restr 0.082 f_bond_d 0.011 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4974 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 55
Software Software Software Name Purpose PHENIX refinement AMoRE phasing CNS refinement HKL-2000 data reduction SCALEPACK data scaling Blu-Ice data collection