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crystal structure of sGLIPR1 soaked with zinc chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RC9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 293 0.085M sodium cacodylate, 25.5%w/v PEG8000, 0.17M Ammonium sulfate, 15% glycerol 0.2mM Zinc Chloride, pH 6.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.85 56.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.92 α = 90 b = 79.72 β = 90 c = 38.76 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD ONYX CCD 2010-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 27.79 99.4 0.179 7.9 5.8 18698 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.1 0.621 2.5 4.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1RC9 2.2 27.788 14042 703 99.54 0.1601 0.1584 0.1537 0.192 0.1837
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.0529 -1.0231 -0.6412
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.974 f_angle_d 0.982 f_chiral_restr 0.071 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1527 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 1
Software Software Software Name Purpose PHENIX refinement PHASER phasing REFMAC refinement CrysalisPro data reduction SCALA data scaling CrysalisPro data collection