X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1IHO 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52890.1 M Bis-Tris, 25% PEG-3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.5852.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.809α = 101.33
b = 77.241β = 94.91
c = 98.462γ = 94.37
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152010-11-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9792APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8333.196.80.04411.62.610957310957334.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.831.8694.40.4582.082.45387

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1IHO1.8333.1109539109539552796.430.17550.17550.17360.2108RANDOM36.882
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.57-0.110.02-1.230.953.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.704
r_dihedral_angle_4_deg17.461
r_dihedral_angle_3_deg15.083
r_dihedral_angle_1_deg5.824
r_scangle_it3.758
r_scbond_it2.36
r_angle_refined_deg1.593
r_mcangle_it1.536
r_angle_other_deg0.96
r_mcbond_it0.902
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.704
r_dihedral_angle_4_deg17.461
r_dihedral_angle_3_deg15.083
r_dihedral_angle_1_deg5.824
r_scangle_it3.758
r_scbond_it2.36
r_angle_refined_deg1.593
r_mcangle_it1.536
r_angle_other_deg0.96
r_mcbond_it0.902
r_mcbond_other0.287
r_chiral_restr0.098
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8261
Nucleic Acid Atoms
Solvent Atoms698
Heterogen Atoms128

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing
HKL-3000phasing