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Structure of the hyperthermostable endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1 in complex with beta-D-glucose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 0.8 M phosphate, 0.2 M sodium chloride, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.4 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.43 α = 90 b = 83.234 β = 90 c = 91.916 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.4586 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 35.4 99.9 62462 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 99.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 35.4 59210 59210 3160 99.81 0.14227 0.14012 0.1827 0.1749 RANDOM 17.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.32 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.991 r_dihedral_angle_4_deg 16.684 r_sphericity_free 13.239 r_dihedral_angle_3_deg 12.621 r_sphericity_bonded 7.848 r_scangle_it 6.293 r_dihedral_angle_1_deg 6 r_scbond_it 4.681 r_mcangle_it 3.415 r_rigid_bond_restr 2.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.991 r_dihedral_angle_4_deg 16.684 r_sphericity_free 13.239 r_dihedral_angle_3_deg 12.621 r_sphericity_bonded 7.848 r_scangle_it 6.293 r_dihedral_angle_1_deg 6 r_scbond_it 4.681 r_mcangle_it 3.415 r_rigid_bond_restr 2.9 r_mcbond_it 2.479 r_angle_refined_deg 2.073 r_chiral_restr 0.167 r_bond_refined_d 0.027 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2927 Nucleic Acid Atoms Solvent Atoms 370 Heterogen Atoms 12
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling