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Fully Reduced (All-ferrous) Pyrococcus rubrerythrin after a 10 second exposure to peroxide.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Capillary batch 7 291 0.025 M HEPES pH 7.0, 8% PEG 2000 MME, Capillary batch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.81 56.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.602 α = 90 b = 104.602 β = 90 c = 79.591 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm 1.0 2010-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.4 0.101 0.082 42 6 38239 38044 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 43.71 38044 1941 99.49 0.1768 0.1756 0.1748 0.1998 0.1992 RANDOM 26.457
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.2 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.021 r_dihedral_angle_4_deg 14.984 r_dihedral_angle_3_deg 14.707 r_scangle_it 8.063 r_dihedral_angle_1_deg 5.234 r_scbond_it 4.714 r_mcangle_it 2.634 r_angle_refined_deg 2.239 r_mcbond_it 1.534 r_chiral_restr 0.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.021 r_dihedral_angle_4_deg 14.984 r_dihedral_angle_3_deg 14.707 r_scangle_it 8.063 r_dihedral_angle_1_deg 5.234 r_scbond_it 4.714 r_mcangle_it 2.634 r_angle_refined_deg 2.239 r_mcbond_it 1.534 r_chiral_restr 0.176 r_bond_refined_d 0.035 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2726 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing