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The crystal structure of AaLeuRS-CP1-D20
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H3N PDB ENTRY 1H3N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 30 % PEG 4000, 0.1 M sodium citrate tribasic dihydrate at pH 5.6 and 0.2 M ammonium acetate , VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.54 51.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.143 α = 90 b = 106.143 β = 90 c = 81.779 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD 2009-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 15748
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 79.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H3N 2.5 37.53 14949 739 94.94 0.2151 0.2126 0.2076 0.2661 0.2579 RANDOM 33.2859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.75 -1.75 3.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.605 r_dihedral_angle_3_deg 15.933 r_dihedral_angle_4_deg 13.544 r_dihedral_angle_1_deg 4.992 r_scangle_it 1.423 r_angle_refined_deg 0.989 r_scbond_it 0.796 r_mcangle_it 0.749 r_mcbond_it 0.399 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.605 r_dihedral_angle_3_deg 15.933 r_dihedral_angle_4_deg 13.544 r_dihedral_angle_1_deg 4.992 r_scangle_it 1.423 r_angle_refined_deg 0.989 r_scbond_it 0.796 r_mcangle_it 0.749 r_mcbond_it 0.399 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3011 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction