☰ Navigation Tabs
Crystal structure of FTase(ALPHA-subunit; BETA-subunit DELTA C10) in complex with BMS3 and lipid substrate FPP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 20% (w/v) PEG 4000, 0.2 M MgCl2, 0.1 M Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.16 61.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.746 α = 90 b = 170.746 β = 90 c = 69.085 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.8 0.06 24 6.2 67245 67104 5 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 100 0.359 6.5 6.1 8682
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3EU5 2.1 29.91 63737 3365 99.83 0.22733 0.22521 0.2325 0.2674 0.2726 RANDOM 36.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 0.6 1.21 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.187 r_dihedral_angle_4_deg 18.68 r_dihedral_angle_3_deg 17.967 r_dihedral_angle_1_deg 7.12 r_mcbond_other 6.205 r_scangle_it 4.725 r_angle_other_deg 4.147 r_mcangle_it 3.141 r_scbond_it 2.806 r_mcbond_it 1.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.187 r_dihedral_angle_4_deg 18.68 r_dihedral_angle_3_deg 17.967 r_dihedral_angle_1_deg 7.12 r_mcbond_other 6.205 r_scangle_it 4.725 r_angle_other_deg 4.147 r_mcangle_it 3.141 r_scbond_it 2.806 r_mcbond_it 1.839 r_angle_refined_deg 1.656 r_symmetry_hbond_refined 0.465 r_symmetry_vdw_other 0.305 r_symmetry_vdw_refined 0.294 r_nbd_refined 0.272 r_nbd_other 0.256 r_xyhbond_nbd_refined 0.236 r_nbtor_refined 0.196 r_xyhbond_nbd_other 0.12 r_chiral_restr 0.113 r_nbtor_other 0.11 r_bond_refined_d 0.017 r_gen_planes_other 0.009 r_gen_planes_refined 0.007 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5839 Nucleic Acid Atoms Solvent Atoms 306 Heterogen Atoms 63
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling