☰ Navigation Tabs
Crystal structure of RabGGTase(DELTA LRR; DELTA IG) in Complex with BMS-analogue 14
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3DSS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 284 14% (w/v) PEG3350, 0.2 M Ca(OAc)2, 0.1 M HEPES, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 284K
Crystal Properties Matthews coefficient Solvent content 2.32 47.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.732 α = 90 b = 91.332 β = 90 c = 114.652 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-05-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9770 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 99 0.041 20.5 3.7 48077 47598 5 37.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.6 0.354 4.8 3.7 6416
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3DSS 2 20 45177 2389 99.07 0.18072 0.17849 0.1859 0.22368 0.2277 RANDOM 36.218
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 -0.28 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.915 r_dihedral_angle_4_deg 18.751 r_dihedral_angle_3_deg 15.386 r_dihedral_angle_1_deg 5.075 r_scangle_it 4.278 r_angle_other_deg 4.179 r_mcbond_other 3.066 r_scbond_it 2.697 r_mcangle_it 2.078 r_mcbond_it 1.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.915 r_dihedral_angle_4_deg 18.751 r_dihedral_angle_3_deg 15.386 r_dihedral_angle_1_deg 5.075 r_scangle_it 4.278 r_angle_other_deg 4.179 r_mcbond_other 3.066 r_scbond_it 2.697 r_mcangle_it 2.078 r_mcbond_it 1.207 r_angle_refined_deg 1.194 r_xyhbond_nbd_other 0.364 r_symmetry_vdw_other 0.306 r_nbd_other 0.231 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.205 r_xyhbond_nbd_refined 0.191 r_nbtor_refined 0.182 r_metal_ion_refined 0.165 r_symmetry_hbond_refined 0.151 r_nbtor_other 0.109 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_other 0.006 r_gen_planes_refined 0.004 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5006 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 56
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling