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Type-2 Cu-depleted fungus laccase from Trametes hirsuta
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FPX PDB ENTRY 3FPX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 Protein solution 44 mg/ml in 0.02M potassium phosphate, pH 6.0. Reservoir solution is 30% PEG 1500, 0.02M potassium phosphate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.46 50.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.653 α = 90 b = 77.051 β = 90 c = 130.216 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8156 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 60 97 0.081 3.5 160653 155833 23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 60 97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FPX 1.2 60 160653 152565 8088 96.95 0.15397 0.15397 0.15263 0.1524 0.17903 0.1791 RANDOM 17.361
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 1.04 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.907 r_dihedral_angle_4_deg 17.997 r_sphericity_free 16.143 r_dihedral_angle_3_deg 10.583 r_dihedral_angle_1_deg 6.583 r_sphericity_bonded 6.094 r_scangle_it 4.609 r_scbond_it 3.44 r_mcangle_it 2.473 r_mcbond_it 1.749
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.907 r_dihedral_angle_4_deg 17.997 r_sphericity_free 16.143 r_dihedral_angle_3_deg 10.583 r_dihedral_angle_1_deg 6.583 r_sphericity_bonded 6.094 r_scangle_it 4.609 r_scbond_it 3.44 r_mcangle_it 2.473 r_mcbond_it 1.749 r_angle_refined_deg 1.687 r_rigid_bond_restr 1.481 r_angle_other_deg 0.951 r_mcbond_other 0.642 r_chiral_restr 0.106 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3794 Nucleic Acid Atoms Solvent Atoms 639 Heterogen Atoms 168
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling