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UDP-N-acetylglucosamine 4,6-dehydratase from Vibrio fischeri
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 277 0.2 M sodium thiocyanate, 20 % PEG-3350, pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.92 α = 102.71 b = 74.837 β = 95.15 c = 88.789 γ = 100.35
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 38.8 97.7 0.088 9.7 2.4 97465 97465 46.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.14 94.1 0.443 1.83 2.2 4672
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 38 97460 97460 4853 97.43 0.189 0.189 0.1866 0.1969 0.2332 0.2424 RANDOM 49.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 1.47 0.53 0.41 -2.84 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.516 r_dihedral_angle_4_deg 19.15 r_dihedral_angle_3_deg 17.213 r_dihedral_angle_1_deg 6.347 r_scangle_it 3.443 r_scbond_it 2.31 r_angle_refined_deg 1.504 r_mcangle_it 1.39 r_angle_other_deg 0.905 r_mcbond_it 0.767
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.516 r_dihedral_angle_4_deg 19.15 r_dihedral_angle_3_deg 17.213 r_dihedral_angle_1_deg 6.347 r_scangle_it 3.443 r_scbond_it 2.31 r_angle_refined_deg 1.504 r_mcangle_it 1.39 r_angle_other_deg 0.905 r_mcbond_it 0.767 r_mcbond_other 0.188 r_chiral_restr 0.083 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11337 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 194
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing