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Structure of Legionella fallonii DegQ (wt)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CS0 PDB ENTRY 3CS0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 292 29.5% (v/v) PEG 400, 100 mM MES pH 6.5, vapor diffusion, sitting drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.06 59.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.7 α = 90 b = 136.7 β = 90 c = 327.001 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2009-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 111.32 98.1 0.045 10.3 2 121567 121567
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 99.7 0.424 0.424 1.7 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CS0 2.15 36.93 115449 6107 98.07 0.21335 0.21137 0.2017 0.25056 0.2403 RANDOM 43.277
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.9 0.95 1.9 -2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.443 r_dihedral_angle_4_deg 20.831 r_dihedral_angle_3_deg 19.683 r_dihedral_angle_1_deg 6.586 r_scangle_it 5.41 r_scbond_it 3.149 r_mcangle_it 2.717 r_angle_other_deg 2.334 r_angle_refined_deg 1.918 r_mcbond_it 1.483
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.443 r_dihedral_angle_4_deg 20.831 r_dihedral_angle_3_deg 19.683 r_dihedral_angle_1_deg 6.586 r_scangle_it 5.41 r_scbond_it 3.149 r_mcangle_it 2.717 r_angle_other_deg 2.334 r_angle_refined_deg 1.918 r_mcbond_it 1.483 r_chiral_restr 0.126 r_mcbond_other 0.083 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11522 Nucleic Acid Atoms Solvent Atoms 468 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction PHASER phasing