☰ Navigation Tabs
Crystal Structure of an outward-facing MBP-Maltose transporter complex bound to AMP-PNP after crystal soaking of the pretranslocation state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R6G pdb entry 2R6G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 32% PEG 400, 0.1 M HEPES, 40 mM magnesium chloride, 50 mM sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.65 66.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.55 α = 86.91 b = 96.283 β = 80.87 c = 112.283 γ = 74.32
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2009-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.03324 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 64.9 0.061 46613 46613
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 23.9 0.532 1.3 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2R6G 3.1 20 46613 43231 2301 82.69 0.21629 0.21426 0.2121 0.25427 0.2499 RANDOM 81.172
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 0.21 0.19 0.63 -0.2 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.357 r_dihedral_angle_3_deg 17.059 r_dihedral_angle_4_deg 16.953 r_dihedral_angle_1_deg 4.655 r_angle_refined_deg 1.011 r_scangle_it 0.815 r_mcangle_it 0.463 r_scbond_it 0.45 r_mcbond_it 0.248 r_chiral_restr 0.065
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.357 r_dihedral_angle_3_deg 17.059 r_dihedral_angle_4_deg 16.953 r_dihedral_angle_1_deg 4.655 r_angle_refined_deg 1.011 r_scangle_it 0.815 r_mcangle_it 0.463 r_scbond_it 0.45 r_mcbond_it 0.248 r_chiral_restr 0.065 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14640 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 138
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling