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Mutant of the Carboxypeptidase T
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OBR PDB ENTRY 1OBR
Crystallization Crystal Properties Matthews coefficient Solvent content 5.09 75.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.6 α = 90 b = 157.6 β = 90 c = 103.925 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.8 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 20 61748
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OBR 1.66 20 60746 3197 71.49 0.16945 0.16849 0.1702 0.18756 0.1907 RANDOM 22.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.07 -0.53 -1.07 1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.087 r_dihedral_angle_4_deg 17.596 r_dihedral_angle_3_deg 11.871 r_dihedral_angle_1_deg 5.955 r_scangle_it 2.881 r_scbond_it 1.806 r_mcangle_it 1.144 r_angle_refined_deg 1.131 r_rigid_bond_restr 0.889 r_mcbond_it 0.615
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.087 r_dihedral_angle_4_deg 17.596 r_dihedral_angle_3_deg 11.871 r_dihedral_angle_1_deg 5.955 r_scangle_it 2.881 r_scbond_it 1.806 r_mcangle_it 1.144 r_angle_refined_deg 1.131 r_rigid_bond_restr 0.889 r_mcbond_it 0.615 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2577 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement