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Tryptophan synthase indoline quinonoid structure with F9 inhibitor in alpha site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 50 MM BICINE, 1 MM EDTA, 5 MM DITHIOERYTHRITOL, 0.02 MM PYRIDOXAL PHOSPHATE SOLUTION, 2 MM SPERMINE, AND 10% PEG 8000, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.65 53.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 184.17 α = 90 b = 60.62 β = 94.62 c = 67.38 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARMOSAIC 225 mm CCD 2007-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 20 93.9 59360 59360
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.95 86.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.85 19.51 59360 59360 3122 100 0.19953 0.19806 0.1988 0.22712 0.2277 RANDOM 32.466
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.16 0.14 5.05 -2.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.777 r_dihedral_angle_4_deg 15.369 r_dihedral_angle_3_deg 13.986 r_dihedral_angle_1_deg 5.428 r_scangle_it 2.435 r_scbond_it 1.464 r_angle_refined_deg 1.227 r_mcangle_it 0.883 r_mcbond_it 0.463 r_metal_ion_refined 0.375
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.777 r_dihedral_angle_4_deg 15.369 r_dihedral_angle_3_deg 13.986 r_dihedral_angle_1_deg 5.428 r_scangle_it 2.435 r_scbond_it 1.464 r_angle_refined_deg 1.227 r_mcangle_it 0.883 r_mcbond_it 0.463 r_metal_ion_refined 0.375 r_nbtor_refined 0.304 r_nbd_refined 0.179 r_xyhbond_nbd_refined 0.165 r_symmetry_vdw_refined 0.162 r_symmetry_hbond_refined 0.099 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4964 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement CNS refinement MAR345 data collection XDS data reduction XSCALE data scaling CNS phasing