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Crystal Structure of the Streptococcus pyogenes NAD+ glycohydrolase SPN in complex with IFS, the Immunity Factor for SPN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 PEG 8000, NaCl, Tris (8.0), vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.57 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 198.817 α = 90 b = 57.892 β = 107.2 c = 89.699 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.97892, 0.97938, 0.99510 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 42.72 24375 24309
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 42.72 23069 1240 99.73 0.21166 0.20802 0.2156 0.27811 0.2803 RANDOM 17.832
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.03 -0.08 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.996 r_dihedral_angle_4_deg 20.413 r_dihedral_angle_3_deg 19.322 r_dihedral_angle_1_deg 6.453 r_scangle_it 1.746 r_angle_refined_deg 1.193 r_scbond_it 1.081 r_angle_other_deg 0.827 r_mcangle_it 0.652 r_mcbond_it 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.996 r_dihedral_angle_4_deg 20.413 r_dihedral_angle_3_deg 19.322 r_dihedral_angle_1_deg 6.453 r_scangle_it 1.746 r_angle_refined_deg 1.193 r_scbond_it 1.081 r_angle_other_deg 0.827 r_mcangle_it 0.652 r_mcbond_it 0.328 r_chiral_restr 0.066 r_mcbond_other 0.049 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6640 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction