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Crystal Structure of E.coli Dha kinase DhaK (H56N)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 295 20% PEG 8000, 0.1M sodium citrate pH 5.6, vapor diffusion, sitting drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.74 55.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.692 α = 77.91 b = 82.561 β = 78.14 c = 92.856 γ = 71.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2010-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 41.52 98 0.126 6.9 4 111975
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.97 2.04 96.9 0.521 3.9 11048
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.97 41.52 111935 5617 97.83 0.1886 0.187 0.1878 0.2195 0.2209 RANDOM 18.5544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.39 -0.92 1.5 -0.85 -0.07 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.273 r_dihedral_angle_4_deg 16.742 r_dihedral_angle_3_deg 13.113 r_dihedral_angle_1_deg 5.644 r_scangle_it 3.033 r_scbond_it 1.772 r_angle_refined_deg 1.199 r_mcangle_it 1.149 r_mcbond_it 0.594 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.273 r_dihedral_angle_4_deg 16.742 r_dihedral_angle_3_deg 13.113 r_dihedral_angle_1_deg 5.644 r_scangle_it 3.033 r_scbond_it 1.772 r_angle_refined_deg 1.199 r_mcangle_it 1.149 r_mcbond_it 0.594 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10176 Nucleic Acid Atoms Solvent Atoms 1018 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling MOLREP phasing