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Crystal structure of the sporulation inhibitor pXO1-118 from Bacillus anthracis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.4 298 5% PEG1000, 40% PEG400, 0.1 M TrisHCl, pH 5.4, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.22 44.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.223 α = 90 b = 89.223 β = 90 c = 35.819 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.9781 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 50 98.9 0.038 55.1 16351 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.76 1.82 96 0.276
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.76 50 15617 830 99.88 0.1802 0.17792 0.1862 0.22316 0.2349 RANDOM 28.056
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 -0.27 -0.53 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.068 r_dihedral_angle_4_deg 20.496 r_dihedral_angle_3_deg 12.402 r_scangle_it 7.782 r_scbond_it 5.176 r_dihedral_angle_1_deg 3.993 r_mcangle_it 2.991 r_mcbond_it 1.774 r_angle_other_deg 1.612 r_angle_refined_deg 1.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.068 r_dihedral_angle_4_deg 20.496 r_dihedral_angle_3_deg 12.402 r_scangle_it 7.782 r_scbond_it 5.176 r_dihedral_angle_1_deg 3.993 r_mcangle_it 2.991 r_mcbond_it 1.774 r_angle_other_deg 1.612 r_angle_refined_deg 1.069 r_mcbond_other 0.644 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1306 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 14
Software Software Software Name Purpose SOLVE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling