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Crystal structure of a putative L-allo-threonine aldolase (lmo0305) from Listeria monocytogenes EGD-E at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.36 277 53.80% 2-methyl-2,4-pentanediol, 0.1M TRIS pH 8.36, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.38 48.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.593 α = 90 b = 96.642 β = 110.81 c = 99.478 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR MAR325 2010-05-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.96109,0.97915,0.97936 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.699 94.4 138522 -3 16.78
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 95.3 0.371 1.9
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD 1.8 29.7 138490 6965 98.9 0.163 0.162 0.198 0.1894 18.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.38 0.67 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.227 r_dihedral_angle_4_deg 13.338 r_dihedral_angle_3_deg 10.187 r_dihedral_angle_1_deg 3.458 r_scangle_it 2.962 r_scbond_it 1.835 r_angle_refined_deg 1.488 r_mcangle_it 1.016 r_angle_other_deg 0.931 r_mcbond_it 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.227 r_dihedral_angle_4_deg 13.338 r_dihedral_angle_3_deg 10.187 r_dihedral_angle_1_deg 3.458 r_scangle_it 2.962 r_scbond_it 1.835 r_angle_refined_deg 1.488 r_mcangle_it 1.016 r_angle_other_deg 0.931 r_mcbond_it 0.59 r_mcbond_other 0.184 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11243 Nucleic Acid Atoms Solvent Atoms 1522 Heterogen Atoms 59
Software Software Software Name Purpose SOLVE phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction qfit model building XDS data reduction