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Crystal Structure of Plasmodium falciparum purine nucleoside phosphorylase in complex with DADMe-ImmG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 291 0.1M sodium formate, 10% PEG 3350, pH 7.4, vapor diffusion, sitting drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.12 41.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.197 α = 67.71 b = 77.371 β = 73.62 c = 92.197 γ = 86.03
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2008-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0809 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 94.2 0.059 11.2 3.2 95778
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 78.9 0.152 3.1 8048
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 20 95775 4781 93.76 0.1995 0.1977 0.2349 0.244 RANDOM 29.7476
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 2.35 1.48 0.38 2.21 -3.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.929 r_dihedral_angle_4_deg 17.061 r_dihedral_angle_3_deg 14.274 r_dihedral_angle_1_deg 6.051 r_scangle_it 2.72 r_scbond_it 1.678 r_angle_refined_deg 1.317 r_mcangle_it 1.055 r_mcbond_it 0.559 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.929 r_dihedral_angle_4_deg 17.061 r_dihedral_angle_3_deg 14.274 r_dihedral_angle_1_deg 6.051 r_scangle_it 2.72 r_scbond_it 1.678 r_angle_refined_deg 1.317 r_mcangle_it 1.055 r_mcbond_it 0.559 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11166 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 153
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction