☰ Navigation Tabs
Bovine beta lactoglobulin crystallized through ligandation of yttrium cations
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch Crystallization 7 277 Crystallized in presents of 3.0 mM yttrium(III) chlorid, pH 7, Batch Crystallization, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.8 α = 90 b = 63.57 β = 90 c = 134.03 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2009-07-02 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418 2 SYNCHROTRON SLS BEAMLINE X06DA 1.8233 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.4 20 99.8 0.111 0.068 19.1 5.5 14221 14221 3 3 42.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.4 2.46 99.9 0.662 0.523 3 5.4 1930
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 19.59 13510 712 100 0.22432 0.2223 0.2167 0.26314 0.256 RANDOM 18.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.94 -3.82 -2.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.729 r_dihedral_angle_3_deg 14.234 r_dihedral_angle_4_deg 5.95 r_dihedral_angle_1_deg 5.102 r_scangle_it 1.19 r_angle_refined_deg 0.989 r_mcangle_it 0.888 r_scbond_it 0.85 r_mcbond_it 0.535 r_chiral_restr 0.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.729 r_dihedral_angle_3_deg 14.234 r_dihedral_angle_4_deg 5.95 r_dihedral_angle_1_deg 5.102 r_scangle_it 1.19 r_angle_refined_deg 0.989 r_mcangle_it 0.888 r_scbond_it 0.85 r_mcbond_it 0.535 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2446 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 6
Software Software Software Name Purpose RAMDAQ data collection SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling