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Crystal structure of PA4794 - GNAT superfamily protein in complex with AcCoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I6C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 1.5 M Ammonium Sulfate, 0.1 M Tris pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.4 48.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.673 α = 90 b = 76.286 β = 90 c = 39.311 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r mirrors 2009-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9792 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 50 97.2 0.043 0.321 58.6 6.3 32584 32584 -3 17.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 100 0.321 0.321 5.4 5.3 1633
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2i6c 1.42 46.01 30700 30700 1634 96.57 0.17383 0.17383 0.17229 0.20219 0.2161 RANDOM 19.272
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 0.36 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.628 r_dihedral_angle_4_deg 14.294 r_dihedral_angle_3_deg 12.337 r_dihedral_angle_1_deg 5.768 r_scangle_it 4.177 r_scbond_it 2.814 r_angle_refined_deg 2.01 r_mcangle_it 1.854 r_mcbond_it 1.173 r_angle_other_deg 1.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.628 r_dihedral_angle_4_deg 14.294 r_dihedral_angle_3_deg 12.337 r_dihedral_angle_1_deg 5.768 r_scangle_it 4.177 r_scbond_it 2.814 r_angle_refined_deg 2.01 r_mcangle_it 1.854 r_mcbond_it 1.173 r_angle_other_deg 1.004 r_mcbond_other 0.419 r_chiral_restr 0.126 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1230 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms 80
Software Software Software Name Purpose HKL-2000 data collection HKL-3000 phasing REFMAC refinement Coot model building HKL-2000 data reduction HKL-2000 data scaling