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E. coli FadL Asp348Ala mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T16 PDB ENTRY 1T16
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 295 15-17% PEG 4K 0.2M KCl, protein dialysed in 10mM NaOAc 50mM NaCl, 10% glycerol 0.4%C8E4, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.75 67.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.88 α = 90 b = 145.97 β = 90 c = 151.24 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 toroidal mirror 2008-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.97981 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 47 98.4 0.118 0.118 11.4 4.6 39050 39050 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.95 98.4 0.514 0.514 4 4.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1T16 2.7 41.48 1.34 39025 1983 99.85 0.2135 0.2104 0.1928 0.2727 0.2585
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -12.7105 -2.6325 -4.5689
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.852 f_angle_d 1.133 f_chiral_restr 0.073 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6558 Nucleic Acid Atoms Solvent Atoms 90 Heterogen Atoms 165
Software Software Software Name Purpose CBASS data collection PHASER phasing PHENIX model building PHENIX refinement HKL-2000 data reduction SCALEPACK data scaling PHENIX phasing