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Crystal Structure of BoxB with phosphate bound to the diiron center
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 1.1 M NaH2PO4
0.2 M K2HPO4
0.1 M citrate / phosphate
0.1 M KCl
0.01M Tris
, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 2 VAPOR DIFFUSION, HANGING DROP 6.5 291 1.1 M NaH2PO4
0.2 M K2HPO4
0.1 M citrate / phosphate
0.1 M KCl
0.01M Tris , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.31 α = 90 b = 213.9 β = 90 c = 138.98 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9999 SLS X10SA 2 SYNCHROTRON SLS BEAMLINE X10SA 1.738 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 50 99.2 0.075 0.089 11.8 3.5 96760 96760
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.1 46.813 1.35 96690 96690 4831 99.2 0.1736 0.172 0.1722 0.2033 0.2004 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 12.905 -11.9695 -0.9355
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.031 f_angle_d 1.104 f_chiral_restr 0.067 f_bond_d 0.012 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7768 Nucleic Acid Atoms Solvent Atoms 704 Heterogen Atoms 68
Software Software Software Name Purpose SHARP phasing PHENIX refinement XDS data reduction XDS data scaling