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Crystal Structure of Cytosol Aminopeptidase from Francisella tularensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 289 0.2M potassium iodide, 20 % PEG 3350, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.67 66.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.483 α = 90 b = 161.483 β = 90 c = 105.27 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2010-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97924 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.9 0.118 10.2 10.4 22700 22700 40.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.75 100 0.524 5.8 10.7 1106
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 50 21500 21500 1159 99.68 0.167 0.167 0.165 0.1613 0.21 0.2059 RANDOM 52.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.03 -0.07 0.1
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 38.915 f_dihedral_angle_4_deg 20.689 f_dihedral_angle_3_deg 19.092 f_scangle_it 12.05 f_scbond_it 9.223 f_mcangle_it 7.595 f_dihedral_angle_1_deg 5.923 f_mcbond_it 4.483 f_angle_refined_deg 1.339 f_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 38.915 f_dihedral_angle_4_deg 20.689 f_dihedral_angle_3_deg 19.092 f_scangle_it 12.05 f_scbond_it 9.223 f_mcangle_it 7.595 f_dihedral_angle_1_deg 5.923 f_mcbond_it 4.483 f_angle_refined_deg 1.339 f_chiral_restr 0.082 f_bond_refined_d 0.011 f_gen_planes_refined 0.006 f_bond_other_d f_angle_other_deg f_gen_planes_other f_nbd_refined f_nbd_other f_nbtor_refined f_nbtor_other f_xyhbond_nbd_refined f_xyhbond_nbd_other f_metal_ion_refined f_metal_ion_other f_symmetry_vdw_refined f_symmetry_vdw_other f_symmetry_hbond_refined f_symmetry_hbond_other f_symmetry_metal_ion_refined f_symmetry_metal_ion_other f_mcbond_other f_rigid_bond_restr f_sphericity_free f_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3475 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms 76
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 data collection HKL-3000 phasing SHELX model building RESOLVE model building BUCCANEER model building PHENIX refinement HKL-3000 data reduction HKL-3000 data scaling SHELX phasing RESOLVE phasing BUCCANEER phasing