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Structures of Clostridium thermocellum CbhA fibronectin(III)-like modules
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 294 1.9 M Sodium Malonate, pH 6.0, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.49 50.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.316 α = 90 b = 42.316 β = 90 c = 116.756 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 Helios mirrors 2009-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 25 99.7 12.67 10862 10862
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.88 98.9 0.2817 2.72 4.51 1573
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.78 25 10241 10241 518 99.17 0.23217 0.23017 0.2468 0.2705 0.2836 RANDOM 25.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.2 1.2 -2.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.74 r_dihedral_angle_4_deg 20.876 r_dihedral_angle_3_deg 16.268 r_dihedral_angle_1_deg 6.648 r_scangle_it 4.22 r_scbond_it 2.936 r_angle_refined_deg 1.98 r_mcangle_it 1.538 r_mcbond_it 1.025 r_angle_other_deg 0.979
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.74 r_dihedral_angle_4_deg 20.876 r_dihedral_angle_3_deg 16.268 r_dihedral_angle_1_deg 6.648 r_scangle_it 4.22 r_scbond_it 2.936 r_angle_refined_deg 1.98 r_mcangle_it 1.538 r_mcbond_it 1.025 r_angle_other_deg 0.979 r_mcbond_other 0.391 r_chiral_restr 0.107 r_bond_refined_d 0.023 r_bond_other_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 669 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 2
Software Software Software Name Purpose PROTEUM PLUS data collection SHELX model building REFMAC refinement SAINT data reduction PROTEUM PLUS data scaling SHELX phasing