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Structure of the class C acid phosphatase from Pasteurella multocida
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ET4 PDB ENTRY 3ET4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 293 20% (w/v) PEG 3350, 0.2 M ammonium citrate, and 10% (v/v) n-propanol, pH 7, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.98 α = 90 b = 106.15 β = 93.11 c = 89.75 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD NOIR-1 2007-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.000 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 26.616 97.8 0.094 0.094 10.4 3.5 62294 62294
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.95 86.7 0.272 0.272 2.4 2.5 8050
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ET4 1.85 26.616 1.36 62271 3141 97.72 0.2145 0.2117 0.2063 0.2672 0.2599 random 23.5014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.5149 -6.4284 0.4749 -2.9897
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.603 f_angle_d 0.939 f_chiral_restr 0.072 f_bond_d 0.006 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5764 Nucleic Acid Atoms Solvent Atoms 573 Heterogen Atoms
Software Software Software Name Purpose SCALA data processing PHENIX refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling MOLREP phasing