3PCE

STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 3-HYDROXYPHENYLACETATE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.4pH 8.4
Crystal Properties
Matthews coefficientSolvent content
2.8556.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 196.57α = 90
b = 127.77β = 97.7
c = 134.63γ = 90
Symmetry
Space GroupI 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293AREA DETECTORSIEMENSCOLLIMATOR1994-03-14M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.061579.80.0910.12.11616941
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.062.14837.81.21.37

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONNATIVE MODEL PHASES2.066113059179.80.16924.18
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23.3
p_staggered_tor17
p_planar_tor2.2
p_scangle_it1.703
p_scbond_it1.054
p_mcangle_it0.937
p_mcbond_it0.543
p_chiral_restr0.222
p_multtor_nbd0.204
p_singtor_nbd0.176
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23.3
p_staggered_tor17
p_planar_tor2.2
p_scangle_it1.703
p_scbond_it1.054
p_mcangle_it0.937
p_mcbond_it0.543
p_chiral_restr0.222
p_multtor_nbd0.204
p_singtor_nbd0.176
p_xyhbond_nbd0.149
p_planar_d0.03
p_angle_d0.029
p_bond_d0.017
p_plane_restr0.013
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms20466
Nucleic Acid Atoms
Solvent Atoms1446
Heterogen Atoms96

Software

Software
Software NamePurpose
PROLSQrefinement
XENGENdata reduction
XENGENdata scaling