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Low resolution X-ray crystal structure of Yeast Rnr1p with dATP bound in the A-site
Crystallization Crystal Properties Matthews coefficient Solvent content 3.83 67.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.509 α = 90 b = 166.509 β = 90 c = 381.697 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 6.61 192.45 9893
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6.61 192.45 9893 9378 469 87.75 0.39326 0.39084 0.3924 0.44181 0.4577 RANDOM 88.172
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.929 r_dihedral_angle_3_deg 22.559 r_dihedral_angle_4_deg 16.259 r_dihedral_angle_1_deg 7.465 r_angle_refined_deg 1.351 r_scangle_it 0.495 r_mcangle_it 0.445 r_scbond_it 0.265 r_mcbond_it 0.245 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.929 r_dihedral_angle_3_deg 22.559 r_dihedral_angle_4_deg 16.259 r_dihedral_angle_1_deg 7.465 r_angle_refined_deg 1.351 r_scangle_it 0.495 r_mcangle_it 0.445 r_scbond_it 0.265 r_mcbond_it 0.245 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14596 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement