☰ Navigation Tabs
Crystal structure of a TetR family transcription regulator (Maqu_1417) from MARINOBACTER AQUAEOLEI VT8 at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 40.0% 1,2-propanediol, 0.1M Acetate pH 4.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.31 46.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.118 α = 90 b = 106.18 β = 90 c = 117.408 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2010-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.134 98.8 0.063 10.07 66710 -3 23.903
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 98.1 0.58 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 29.134 66636 3379 99.78 0.1693 0.1671 0.1769 0.2107 0.2202 RANDOM 32.3405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 -0.23 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.824 r_dihedral_angle_4_deg 15.996 r_dihedral_angle_3_deg 13.183 r_scangle_it 8.149 r_scbond_it 5.636 r_dihedral_angle_1_deg 3.625 r_mcangle_it 3.335 r_mcbond_it 2.079 r_angle_refined_deg 1.456 r_angle_other_deg 0.944
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.824 r_dihedral_angle_4_deg 15.996 r_dihedral_angle_3_deg 13.183 r_scangle_it 8.149 r_scbond_it 5.636 r_dihedral_angle_1_deg 3.625 r_mcangle_it 3.335 r_mcbond_it 2.079 r_angle_refined_deg 1.456 r_angle_other_deg 0.944 r_mcbond_other 0.644 r_chiral_restr 0.09 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6169 Nucleic Acid Atoms Solvent Atoms 466 Heterogen Atoms 73
Software Software Software Name Purpose SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing