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Structure of I274C variant of E. coli KatE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 17% PEG3350, 1.6 M LiCl, 0.1 M Tris, pH 9.0, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.14 42.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.66 α = 90 b = 133.02 β = 109.59 c = 122.59 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Marmosaic mirrors 2009-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97934 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 28.55 91.8 0.081 8.4 3.1 429958 429958 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.56 79.7 0.483 0.483 1.6 2.7 54412
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.48 28.55 429958 429789 21507 91.7 0.1451 0.1451 0.1434 0.143 0.1775 0.1775 RANDOM 14.4252
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 0.4 -0.48 0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.801 r_dihedral_angle_4_deg 14.016 r_dihedral_angle_3_deg 13.83 r_dihedral_angle_1_deg 6.416 r_scangle_it 4.23 r_scbond_it 2.838 r_angle_refined_deg 2.357 r_mcangle_it 1.921 r_mcbond_it 1.239 r_chiral_restr 0.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.801 r_dihedral_angle_4_deg 14.016 r_dihedral_angle_3_deg 13.83 r_dihedral_angle_1_deg 6.416 r_scangle_it 4.23 r_scbond_it 2.838 r_angle_refined_deg 2.357 r_mcangle_it 1.921 r_mcbond_it 1.239 r_chiral_restr 0.226 r_bond_refined_d 0.029 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22936 Nucleic Acid Atoms Solvent Atoms 3496 Heterogen Atoms 356
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MxDC data collection MOSFLM data reduction REFMAC phasing