☰ Navigation Tabs
Radiation damage study of thermolysin - 160K structure D (7.1 MGy)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 298 40% DMSO, pH 5.0, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.38 48.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.94 α = 90 b = 93.94 β = 90 c = 128.68 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 31.674 99.8 0.091 0.091 14.8 5.6 17625 17625
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.9 0.273 0.273 2.7 5.8 2515
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 31.67 17610 891 99.76 0.1557 0.1528 0.1544 0.2104 0.2113 RANDOM 23.9863
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.05 -0.1 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.247 r_dihedral_angle_4_deg 19.83 r_dihedral_angle_3_deg 15.468 r_dihedral_angle_1_deg 6.101 r_scangle_it 4.081 r_scbond_it 2.827 r_mcangle_it 1.777 r_angle_refined_deg 1.593 r_mcbond_it 0.993 r_symmetry_hbond_refined 0.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.247 r_dihedral_angle_4_deg 19.83 r_dihedral_angle_3_deg 15.468 r_dihedral_angle_1_deg 6.101 r_scangle_it 4.081 r_scbond_it 2.827 r_mcangle_it 1.777 r_angle_refined_deg 1.593 r_mcbond_it 0.993 r_symmetry_hbond_refined 0.447 r_nbtor_refined 0.31 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.195 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.107 r_metal_ion_refined 0.095 r_bond_refined_d 0.018 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2432 Nucleic Acid Atoms Solvent Atoms 258 Heterogen Atoms 5
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction