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Radiation damage study of thermolysin - 160K structure B (2.4 MGy)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 298 40% DMSO, pH 5.0, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.38 48.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.75 α = 90 b = 93.75 β = 90 c = 128.84 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 31.67 99.8 0.076 0.076 18.1 5.6 17564 17564
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.9 0.114 0.114 6.2 5.8 2499
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 31.67 17552 888 99.73 0.1475 0.1447 0.1465 0.1995 0.1995 RANDOM 16.5852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.04 -0.09 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.819 r_dihedral_angle_4_deg 21.217 r_dihedral_angle_3_deg 14.85 r_dihedral_angle_1_deg 5.702 r_scangle_it 3.445 r_scbond_it 2.384 r_mcangle_it 1.474 r_angle_refined_deg 1.448 r_mcbond_it 0.858 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.819 r_dihedral_angle_4_deg 21.217 r_dihedral_angle_3_deg 14.85 r_dihedral_angle_1_deg 5.702 r_scangle_it 3.445 r_scbond_it 2.384 r_mcangle_it 1.474 r_angle_refined_deg 1.448 r_mcbond_it 0.858 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.275 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.171 r_metal_ion_refined 0.132 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2432 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 5
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction