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Radiation damage study of thermolysin - 100K structure B (2.5 MGy)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 298 40% DMSO, pH 5.0, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.35 47.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.26 α = 90 b = 93.26 β = 90 c = 128.69 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 31.58 99.9 0.078 0.078 18.1 5.6 17380 17380
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.091 0.091 7.4 5.8 2482
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 31.58 17365 876 99.77 0.149 0.146 0.1492 0.2055 0.2049 RANDOM 12.8859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.11 -0.23 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.104 r_dihedral_angle_4_deg 19.522 r_dihedral_angle_3_deg 14.303 r_dihedral_angle_1_deg 5.828 r_scangle_it 3.315 r_scbond_it 2.34 r_angle_refined_deg 1.468 r_mcangle_it 1.287 r_mcbond_it 0.783 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.104 r_dihedral_angle_4_deg 19.522 r_dihedral_angle_3_deg 14.303 r_dihedral_angle_1_deg 5.828 r_scangle_it 3.315 r_scbond_it 2.34 r_angle_refined_deg 1.468 r_mcangle_it 1.287 r_mcbond_it 0.783 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.297 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.202 r_xyhbond_nbd_refined 0.153 r_metal_ion_refined 0.121 r_chiral_restr 0.098 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2432 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 5
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction