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Human adipocyte lipid-binding protein FABP4 in complex with (S)-ibuprofen
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 1.6 M sodium citrate, pH 6.5, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.09 41.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.328 α = 90 b = 53.38 β = 90 c = 75.031 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.000 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.06 43.5 98.4 0.124 6.1 6.3 58556 58556
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.06 1.12 94.3 0.725 0.725 1 3.8
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.15 43.5 46490 2355 99 0.16 0.158 0.1679 0.191 0.2013 17.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 -0.13 -1.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.384 r_dihedral_angle_4_deg 19.104 r_dihedral_angle_3_deg 15.52 r_scangle_it 6.77 r_dihedral_angle_1_deg 6.316 r_scbond_it 4.824 r_mcangle_it 3.355 r_mcbond_it 2.197 r_rigid_bond_restr 2.04 r_angle_refined_deg 2.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.384 r_dihedral_angle_4_deg 19.104 r_dihedral_angle_3_deg 15.52 r_scangle_it 6.77 r_dihedral_angle_1_deg 6.316 r_scbond_it 4.824 r_mcangle_it 3.355 r_mcbond_it 2.197 r_rigid_bond_restr 2.04 r_angle_refined_deg 2.01 r_angle_other_deg 1.021 r_mcbond_other 0.734 r_chiral_restr 0.112 r_bond_refined_d 0.021 r_bond_other_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1072 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction