☰ Navigation Tabs
Crystal structure of Entamoeba histolytica Serine acetyltransferase 1 in complex with L-cysteine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 289 Peg 2000, NaCl, Glycerol, Tris, L-cysteine, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.09 41.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.047 α = 90 b = 110.047 β = 90 c = 64.002 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.0337 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 50 97.1 0.073 12.5 5.5 26982
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.84 80.8 0.296 4.5 2235
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.78 30 26973 1361 97.08 0.1935 0.1908 0.1892 0.2454 0.2408 RANDOM 26.3688
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.57 -0.78 -1.57 2.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.215 r_dihedral_angle_4_deg 15.647 r_dihedral_angle_3_deg 13.331 r_dihedral_angle_1_deg 6.625 r_scangle_it 3.457 r_scbond_it 2.439 r_mcangle_it 1.519 r_angle_refined_deg 1.513 r_mcbond_it 0.913 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.215 r_dihedral_angle_4_deg 15.647 r_dihedral_angle_3_deg 13.331 r_dihedral_angle_1_deg 6.625 r_scangle_it 3.457 r_scbond_it 2.439 r_mcangle_it 1.519 r_angle_refined_deg 1.513 r_mcbond_it 0.913 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2148 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection