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Integrin binding collagen peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 2.0 M ammonium sulfate, 50 mM Tris pH 7.5, 0.1 M Lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.91 35.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.018 α = 90 b = 17.288 β = 91.35 c = 26.048 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 22.37 94.8 0.052 14.1 3.45 4110 4110
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.7 22.37 3914 195 94.9 0.19837 0.19624 0.1923 0.24016 0.2382 RANDOM 21.184
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.06 0.05 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.652 r_dihedral_angle_3_deg 17.004 r_dihedral_angle_1_deg 8.143 r_scangle_it 5.534 r_scbond_it 3.225 r_angle_refined_deg 2.816 r_mcangle_it 1.976 r_mcbond_it 1.326 r_chiral_restr 0.165 r_bond_refined_d 0.028
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.652 r_dihedral_angle_3_deg 17.004 r_dihedral_angle_1_deg 8.143 r_scangle_it 5.534 r_scbond_it 3.225 r_angle_refined_deg 2.816 r_mcangle_it 1.976 r_mcbond_it 1.326 r_chiral_restr 0.165 r_bond_refined_d 0.028 r_gen_planes_refined 0.016 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 350 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling