☰ Navigation Tabs
Structure of a dimeric GluA3 N-terminal domain (NTD) at 4.2 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.7 293 200mM ammonium phosphate, 20% PEG3350, pH 4.7, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.57 52.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.96 α = 90 b = 127.92 β = 90 c = 130.05 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 IMAGE PLATE RIGAKU 2010-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.2 91.197 99.7 0.316 3.7 3.6 13979 13979
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 4.2 4.43 99.8 0.822 0.822 0.964 0.494 0.9 3.6 2008
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4.2 55.41 13916 688 99.22 0.3075 0.3059 0.2968 0.3377 0.3185 RANDOM 116.809
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 -0.59 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.458 r_dihedral_angle_3_deg 16.377 r_dihedral_angle_4_deg 8.247 r_dihedral_angle_1_deg 4.124 r_angle_refined_deg 0.822 r_scangle_it 0.125 r_scbond_it 0.07 r_chiral_restr 0.058 r_mcangle_it 0.053 r_mcbond_it 0.027
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.458 r_dihedral_angle_3_deg 16.377 r_dihedral_angle_4_deg 8.247 r_dihedral_angle_1_deg 4.124 r_angle_refined_deg 0.822 r_scangle_it 0.125 r_scbond_it 0.07 r_chiral_restr 0.058 r_mcangle_it 0.053 r_mcbond_it 0.027 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11484 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction PHASER phasing