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Discovery and structural characterization of a new glycoside hydrolase family abundant in coastal waters that was annotated as 'hypothetical protein'
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 14% PEG 6000, 4 mM Zinc chloride, 2% MPD, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.43 49.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.99 α = 90 b = 96.803 β = 90 c = 126.836 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-04-12 M MAD 2 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9184 SOLEIL PROXIMA 1 2 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.95 45 94.8 0.075 0.075 8 6.1 66181 62740 21.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.95 2 85.5 0.435 0.435 3.9 4.7 4086
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 45 59557 3182 94.8 0.1718 0.16955 0.1706 0.21323 0.2136 RANDOM 21.486
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 -0.17 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.795 r_dihedral_angle_4_deg 19.093 r_dihedral_angle_3_deg 13.685 r_dihedral_angle_1_deg 6.917 r_scangle_it 4.422 r_scbond_it 2.972 r_angle_refined_deg 1.835 r_mcangle_it 1.792 r_mcbond_it 1.146 r_chiral_restr 0.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.795 r_dihedral_angle_4_deg 19.093 r_dihedral_angle_3_deg 13.685 r_dihedral_angle_1_deg 6.917 r_scangle_it 4.422 r_scbond_it 2.972 r_angle_refined_deg 1.835 r_mcangle_it 1.792 r_mcbond_it 1.146 r_chiral_restr 0.141 r_bond_refined_d 0.024 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5804 Nucleic Acid Atoms Solvent Atoms 672 Heterogen Atoms 4
Software Software Software Name Purpose ADSC data collection SHARP phasing REFMAC refinement XDS data reduction SCALA data scaling