☰ Navigation Tabs
Crystal structure of Bombyx mori densovirus 1 capsid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 2% PEG8000, 10mM Tris-HCl, 30% glycerol, initial protein concentration in drop 5mg/ml, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 245.4 α = 59.98 b = 245.6 β = 67.93 c = 245.7 γ = 72.27
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 162 mm diameter active area, 3 sec read-out, 2048 x 2048 of 0.079mm pixels 2004-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 1.2 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 95.7 0.044 0.044 16.9 1.9 789029 789029
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 76.6 0.122 1.3 63108
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 3.1 45 788393 788393 95.4 0.2089 0.2089 0.2089 0.2031 0.2028 None selected, because of icosahedral symmetry averaging 17.7607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.525 -2.735 -1.29 -0.648 4.272 2.174
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.895 c_mcangle_it 1.892 c_scbond_it 1.854 c_mcbond_it 1.098
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3290 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling CNS refinement PDB_EXTRACT data extraction HKL-2000 data collection DENZO data reduction CNS phasing AVE phasing