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Structure of Pseudomonas aeruginosa elongation factor P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 4.5 298 1.35M KPhosphate, 0.15M NaPhosphate, 0.2M NaAcetate PH 4.5, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.06 59.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.852 α = 90.19 b = 51.986 β = 99.52 c = 67.581 γ = 104.57
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2010-06-14 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2010-05-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.97865 Photon Factory BL-17A 2 SYNCHROTRON PAL/PLS BEAMLINE 4A 0.97904 PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.75 19.81 90.94 51088 46460
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 19.81 44114 2346 90.94 0.20679 0.20389 0.2052 0.2593 0.2664 RANDOM 36.897
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 0.44 1.33 0.4 0.33 1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.307 r_dihedral_angle_4_deg 16.129 r_dihedral_angle_3_deg 14.828 r_dihedral_angle_1_deg 6.226 r_scangle_it 5.447 r_scbond_it 3.272 r_mcangle_it 2.181 r_angle_refined_deg 1.764 r_mcbond_it 1.23 r_symmetry_hbond_refined 0.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.307 r_dihedral_angle_4_deg 16.129 r_dihedral_angle_3_deg 14.828 r_dihedral_angle_1_deg 6.226 r_scangle_it 5.447 r_scbond_it 3.272 r_mcangle_it 2.181 r_angle_refined_deg 1.764 r_mcbond_it 1.23 r_symmetry_hbond_refined 0.394 r_nbtor_refined 0.31 r_nbd_refined 0.256 r_xyhbond_nbd_refined 0.243 r_symmetry_vdw_refined 0.22 r_chiral_restr 0.121 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2924 Nucleic Acid Atoms Solvent Atoms 492 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing