☰ Navigation Tabs
HCV NS3/4A in complex with ligand 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DXP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.2 293 NaCl, pH 5.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 51.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.401 α = 90 b = 94.401 β = 90 c = 83.129 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD PILATUS 6M mirrors 2009-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.76 81.65 98.9 0.123 6.7 10926 10926
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.76 2.9 92.6 0.643 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1DXP 2.76 81.65 10158 10158 762 99.97 0.22271 0.21892 0.21483 0.2736 0.2347 RANDOM 36.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.09 0.18 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.592 r_dihedral_angle_3_deg 15.943 r_dihedral_angle_4_deg 13.551 r_dihedral_angle_1_deg 5.522 r_angle_other_deg 3.427 r_scangle_it 3.035 r_scbond_it 2.194 r_mcangle_it 1.514 r_mcbond_it 1.195 r_angle_refined_deg 1.181
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.592 r_dihedral_angle_3_deg 15.943 r_dihedral_angle_4_deg 13.551 r_dihedral_angle_1_deg 5.522 r_angle_other_deg 3.427 r_scangle_it 3.035 r_scbond_it 2.194 r_mcangle_it 1.514 r_mcbond_it 1.195 r_angle_refined_deg 1.181 r_xyhbond_nbd_refined 0.32 r_nbd_refined 0.181 r_nbd_other 0.176 r_nbtor_refined 0.167 r_mcbond_other 0.156 r_symmetry_vdw_other 0.145 r_symmetry_vdw_refined 0.095 r_nbtor_other 0.082 r_symmetry_hbond_refined 0.082 r_chiral_restr 0.056 r_metal_ion_refined 0.035 r_bond_refined_d 0.006 r_bond_other_d 0.005 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2815 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 2
Software Software Software Name Purpose XDS data scaling MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling