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Crystal structure of human galectin-1 in complex with lactobionic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 293 4-8 microlitre drops consisting of equal volumes of protein solution (20 mM sodium potassium phosphate buffer, pH 7.0, and protein at concentration of 10 mg/mL) and reservoir solution (0.2 M ammonium sulphate, 25% w/v polyethylene glycol 4000, 0.1M sodium acetate trihydrate, pH 6.2), VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.48 50.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.711 α = 90 b = 58.57 β = 90 c = 111.622 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD BRUKER SMART 6000 2009-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 56.2 94.6 0.051 10 14888 14888
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.19 55.81 14888 14103 752 94.58 0.17516 0.17259 0.1716 0.22606 0.2287 RANDOM 29.687
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.56 -1.42 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.288 r_dihedral_angle_4_deg 16.39 r_dihedral_angle_1_deg 13.492 r_dihedral_angle_3_deg 13.439 r_mcangle_it 5.238 r_mcbond_it 3.45 r_scangle_it 2.658 r_scbond_it 1.77 r_angle_refined_deg 1.051 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.288 r_dihedral_angle_4_deg 16.39 r_dihedral_angle_1_deg 13.492 r_dihedral_angle_3_deg 13.439 r_mcangle_it 5.238 r_mcbond_it 3.45 r_scangle_it 2.658 r_scbond_it 1.77 r_angle_refined_deg 1.051 r_nbtor_refined 0.304 r_symmetry_hbond_refined 0.223 r_nbd_refined 0.181 r_symmetry_vdw_refined 0.134 r_xyhbond_nbd_refined 0.115 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2065 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 48
Software Software Software Name Purpose PROTEUM PLUS data collection REFMAC refinement SAINT data reduction SCALA data scaling