☰ Navigation Tabs
Crystal Structure of Acyl-CoA Dehydrogenase complexed with FAD from Bacillus anthracis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z1Q PDBID 2Z1Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 0.05 M Ammonium sulfate 0.05 M BIS-TRIS pH6.5, 30 % v/v Pentaerythritol ethoxylate (15/4 EO/OH), VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.74 55.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.613 α = 92.8 b = 98.028 β = 106.63 c = 107.743 γ = 105.3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2010-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97926 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 50 97.3 0.054 12.1 2.5 195135 195135
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.97 2 92.6 0.44 2.03 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDBID 2Z1Q 1.97 50 185170 185170 9842 96.92 0.16417 0.1622 0.1638 0.20131 0.2024 RANDOM 46.751
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 1.16 2.1 0.06 3.62 2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.668 r_dihedral_angle_4_deg 18.203 r_dihedral_angle_3_deg 15.647 r_scangle_it 5.649 r_dihedral_angle_1_deg 5.167 r_scbond_it 3.993 r_mcangle_it 1.833 r_angle_refined_deg 1.425 r_mcbond_it 0.979 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.668 r_dihedral_angle_4_deg 18.203 r_dihedral_angle_3_deg 15.647 r_scangle_it 5.649 r_dihedral_angle_1_deg 5.167 r_scbond_it 3.993 r_mcangle_it 1.833 r_angle_refined_deg 1.425 r_mcbond_it 0.979 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18051 Nucleic Acid Atoms Solvent Atoms 2147 Heterogen Atoms 362
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection BALBES phasing PHENIX refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling