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Crystal structure of AF1382 from Archaeoglobus fulgidus, High resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O3K PDB ENTRY 3O3K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified macrobatch 4.6 291 Microbatch using 1.0 microliter drops containing equal volumes of protein concentrate (2.8 mg/ml) and solution containg 0.2 M ammonium sulfate, 0.1 M sodium acetate, 30% w/v polyethylene glycol monomethyl ether, temperature 291k, pH 4.6, modified macrobatch
Crystal Properties Matthews coefficient Solvent content 2.7 54.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.033 α = 90 b = 53.033 β = 90 c = 40.968 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD ROSENBAUM 2007-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.974 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.9 0.051 60.66 13.3 9876 9859
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 99.8 0.233 12.96 12.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS PDB ENTRY 3O3K 1.8501 37.5 9876 9761 493 98.97 0.1804 0.1786 0.1772 0.2145 0.2141
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5977 -0.5977 1.1953
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.608 f_angle_d 0.998 f_chiral_restr 0.067 f_bond_d 0.008 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 748 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 6
Software Software Software Name Purpose PHENIX refinement CNS refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing SERGUI data collection