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MDR769 HIV-1 protease complexed with p2/NC hepta-peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 298 0.8M NaCl
0.1 M MES
, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.36 47.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.368 α = 90 b = 45.368 β = 90 c = 102.707 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD MARMOSAIC 300 mm CCD 2008-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0332 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 45.4 100 14209 14209 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 34 13331 13326 720 99.96 0.19631 0.19939 0.19631 0.1946 0.26197 0.2585 RANDOM 27.986
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.09 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.379 r_dihedral_angle_3_deg 13.929 r_dihedral_angle_4_deg 9.887 r_dihedral_angle_1_deg 6.529 r_scangle_it 4.076 r_scbond_it 2.506 r_mcangle_it 1.7 r_mcbond_it 1.497 r_angle_refined_deg 1.476 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.379 r_dihedral_angle_3_deg 13.929 r_dihedral_angle_4_deg 9.887 r_dihedral_angle_1_deg 6.529 r_scangle_it 4.076 r_scbond_it 2.506 r_mcangle_it 1.7 r_mcbond_it 1.497 r_angle_refined_deg 1.476 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.264 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.107 r_symmetry_hbond_refined 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1569 Nucleic Acid Atoms Solvent Atoms 191 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling