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MDR769 HIV-1 protease complexed with TF/PR hepta-peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 298 0.8M NaCl
01 M MES
, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.37 48.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.612 α = 90 b = 45.612 β = 90 c = 102.003 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD MARMOSAIC 300 mm CCD 2008-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0332 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 45.596 100 26078 26078 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 45.6 26091 26078 1377 99.95 0.19468 0.19658 0.19468 0.1938 0.2316 0.2334 RANDOM 19.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.38 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.937 r_dihedral_angle_4_deg 10.794 r_dihedral_angle_3_deg 10.54 r_dihedral_angle_1_deg 6.024 r_scangle_it 4.058 r_scbond_it 2.434 r_mcangle_it 1.489 r_mcbond_it 1.397 r_angle_refined_deg 1.31 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.937 r_dihedral_angle_4_deg 10.794 r_dihedral_angle_3_deg 10.54 r_dihedral_angle_1_deg 6.024 r_scangle_it 4.058 r_scbond_it 2.434 r_mcangle_it 1.489 r_mcbond_it 1.397 r_angle_refined_deg 1.31 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.12 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1575 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling